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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0247s0170.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | AP2 | ||||||||
Protein Properties | Length: 503aa MW: 54835.6 Da PI: 7.8312 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 161 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g SapurV1A.0247s0170.4.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210 78*******************......55************************997 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 253 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g SapurV1A.0247s0170.4.p 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 303 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 161 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-16 | 161 | 220 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 162 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-33 | 162 | 224 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.95E-12 | 162 | 220 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 162 | 218 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-9 | 253 | 303 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-16 | 253 | 312 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.73E-25 | 253 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 254 | 311 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.514 | 254 | 311 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-31 | 254 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 255 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 293 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN 60 GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV 120 QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNVS DYDEDIKQMS NFTKEEFVHI 240 LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK 300 CNGREAVTNF EPSTYEVEML SEPNSGVTYT DGNQNLDLNL GIAPPDTSDI LKVNSNVGGF 360 YFHSGWDGVS TDRAPKFLNS GSATMKNQLP NGPGVTSVHP PPMWDGLNHR VFPIYEERAI 420 EKRMEVDSFP NWTRQTQVPY GGGANALPVF STAASSGFAS SAIMAPSAAA GQLHFSSSTT 480 LHHRNSSSVT NPSNISQFYC RS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0247s0170.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322849.2 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | B8AMA9 | 1e-103 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q8H443 | 1e-103 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2K1XCT2 | 0.0 | A0A2K1XCT2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s08530.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-105 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0247s0170.4.p |
Publications ? help Back to Top | |||
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