PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0247s0170.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 531aa    MW: 58180.9 Da    PI: 8.5161
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0247s0170.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323.2e-10161192137
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfg 37 
                             s+y+GV++++++grW+++I+d      + k+++lg+f 
  SapurV1A.0247s0170.3.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGNFK 192
                             78*******************......55******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-20162267IPR001471AP2/ERF domain
PROSITE profilePS5103214.328162261IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-7228263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-9231262IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-6296340IPR016177DNA-binding domain
CDDcd000183.05E-13296341No hitNo description
SMARTSM003805.3E-13297345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN  60
GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV  120
QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGN FKIILFVYLK LTLIHWCYGV QLILANLVFI YFVNLGVWFL VGGFDTAHAA  240
ARAYDRAAIK FRGVDADINF NVSDYDEDIK QMSNFTKEEF VHILRRQSTG FSRGSSKYRG  300
VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP STYEVEMLSE PNSGVTYTDG  360
NQNLDLNLGI APPDTSDILK VNSNVGGFYF HSGWDGVSTD RAPKFLNSGS ATMKNQLPNG  420
PGVTSVHPPP MWDGLNHRVF PIYEERAIEK RMEVDSFPNW TRQTQVPYGG GANALPVFST  480
AASSGFASSA IMAPSAAAGQ LHFSSSTTLH HRNSSSVTNP SNISQFYCRS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0247s0170.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443792.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
TrEMBLA0A2K1XCQ80.0A0A2K1XCQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-85related to AP2.7