PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SapurV1A.0241s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 374aa MW: 41892.8 Da PI: 8.328

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0241s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25.9	2.9e-08	42	77	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C +CGn a+ C ++ C+ CC C+ hv SapurV1A.0241s0070.1.p 42 KPKCIQCGNVARSRCPYQSCKSCCSRAQNPCHIHVL 77 568*******************99999***94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-5	44	79	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAASSPVMSN NSSETGQTSI STAAGGTTSF SAPPKTLRGL NKPKCIQCGN VARSRCPYQS 60 CKSCCSRAQN PCHIHVLKAN ATFPDKTPAS SAPLFEQQVN EAPPPVSSHR AASLRQLSSN 120 FSQFNNLHSP LRSRKPLTRK EAAAINEWRF SKLKEFRDRN IEVENEAFDR YMHNISLLEE 180 VFSLKSFLEG STEGESLSSN HDHACAKDDT EEKMVSEQKL KLRSNLSRSE NDRKRLQQVV 240 DVGLKKLQKL ELNNGSVNSR SELDKRPETA KSLRAERASA LSDLMDKLNK ARNEEDLKSC 300 LETRAQLYSQ RDRSRTETED SEVLREQTAK KDVAPQKELD YFSQKLFRAV EIDHEALTSI 360 DAHFSSLEKI EDL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAASSPVMSN NSSETGQTSI STAAGGTTSF SAPPKTLRGL NKPKCIQCGN VARSRCPYQS  60
CKSCCSRAQN PCHIHVLKAN ATFPDKTPAS SAPLFEQQVN EAPPPVSSHR AASLRQLSSN  120
FSQFNNLHSP LRSRKPLTRK EAAAINEWRF SKLKEFRDRN IEVENEAFDR YMHNISLLEE  180
VFSLKSFLEG STEGESLSSN HDHACAKDDT EEKMVSEQKL KLRSNLSRSE NDRKRLQQVV  240
DVGLKKLQKL ELNNGSVNSR SELDKRPETA KSLRAERASA LSDLMDKLNK ARNEEDLKSC  300
LETRAQLYSQ RDRSRTETED SEVLREQTAK KDVAPQKELD YFSQKLFRAV EIDHEALTSI  360
DAHFSSLEKI EDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0241s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032005.1	0.0	PREDICTED: uncharacterized protein LOC105130965
TrEMBL	B9GM58	0.0	B9GM58_POPTR; Uncharacterized protein
STRING	POPTR_0003s08400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-107

Link Out ? help Back to Top
Phytozome	SapurV1A.0241s0070.1.p