PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0235s0100.14.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 193aa    MW: 21185.8 Da    PI: 10.6971
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0235s0100.14.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.71.9e-11555146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                             +++WT+eE+  l+ +v ++G+g W+tI            R+  ++k++w++
  SapurV1A.0235s0100.14.p  5 KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDfsavlSLRSNVDLKDKWRN 55
                             79***********************************88**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.413161IPR017930Myb domain
SuperFamilySSF466891.35E-15267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-13456IPR009057Homeodomain-like
SMARTSM007174.7E-6459IPR001005SANT/Myb domain
PfamPF002491.0E-7555IPR001005SANT/Myb domain
CDDcd116603.88E-18657No hitNo description
SMARTSM005266.7E-9116182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.004119192IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-13122179IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-12123179IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.6E-9124179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILMDPDFSAV LSLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRSPLTPK HEENGKALSV VVQSNEEVVD AKPLAMASGT PRNGGPKDLL  120
ARLDNLILEA ITTLKEPSGS DRASIALYIQ EKYWAPMNLR KLLGGKLKHL TANGKLIKVM  180
ITLRWCTSMH GN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0235s0100.14.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484591e-112EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320656.21e-125telomere repeat-binding factor 2 isoform X3
RefseqXP_011007861.11e-125PREDICTED: telomere repeat-binding factor 2-like isoform X1
RefseqXP_011007862.11e-125PREDICTED: telomere repeat-binding factor 2-like isoform X1
RefseqXP_011007864.11e-125PREDICTED: telomere repeat-binding factor 2-like isoform X3
RefseqXP_011007865.11e-125PREDICTED: telomere repeat-binding factor 2-like isoform X4
RefseqXP_011007866.11e-125PREDICTED: telomere repeat-binding factor 2-like isoform X5
RefseqXP_024441508.11e-125telomere repeat-binding factor 2 isoform X1
RefseqXP_024441509.11e-125telomere repeat-binding factor 2 isoform X1
RefseqXP_024441510.11e-125telomere repeat-binding factor 2 isoform X2
RefseqXP_024441511.11e-125telomere repeat-binding factor 2 isoform X4
SwissprotQ8VWK48e-66TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2K1XNH31e-124A0A2K1XNH3_POPTR; Uncharacterized protein
TrEMBLB9IBK21e-124B9IBK2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01010.11e-125(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-64MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]