PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0235s0100.13.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21185.8 Da PI: 10.6971 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 1.9e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI R+ ++k++w++ SapurV1A.0235s0100.13.p 5 KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDfsavlSLRSNVDLKDKWRN 55 79***********************************88**********99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.413 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.88E-18 | 6 | 57 | No hit | No description |
SMART | SM00526 | 6.7E-9 | 116 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 18.004 | 119 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.71E-13 | 122 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-12 | 123 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.6E-9 | 124 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILMDPDFSAV LSLRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRSPLTPK HEENGKALSV VVQSNEEVVD AKPLAMASGT PRNGGPKDLL 120 ARLDNLILEA ITTLKEPSGS DRASIALYIQ EKYWAPMNLR KLLGGKLKHL TANGKLIKVM 180 ITLRWCTSMH GN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0235s0100.13.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148459 | 1e-112 | EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320656.2 | 1e-125 | telomere repeat-binding factor 2 isoform X3 | ||||
Refseq | XP_011007861.1 | 1e-125 | PREDICTED: telomere repeat-binding factor 2-like isoform X1 | ||||
Refseq | XP_011007862.1 | 1e-125 | PREDICTED: telomere repeat-binding factor 2-like isoform X1 | ||||
Refseq | XP_011007864.1 | 1e-125 | PREDICTED: telomere repeat-binding factor 2-like isoform X3 | ||||
Refseq | XP_011007865.1 | 1e-125 | PREDICTED: telomere repeat-binding factor 2-like isoform X4 | ||||
Refseq | XP_011007866.1 | 1e-125 | PREDICTED: telomere repeat-binding factor 2-like isoform X5 | ||||
Refseq | XP_024441508.1 | 1e-125 | telomere repeat-binding factor 2 isoform X1 | ||||
Refseq | XP_024441509.1 | 1e-125 | telomere repeat-binding factor 2 isoform X1 | ||||
Refseq | XP_024441510.1 | 1e-125 | telomere repeat-binding factor 2 isoform X2 | ||||
Refseq | XP_024441511.1 | 1e-125 | telomere repeat-binding factor 2 isoform X4 | ||||
Swissprot | Q8VWK4 | 8e-66 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A2K1XNH3 | 1e-124 | A0A2K1XNH3_POPTR; Uncharacterized protein | ||||
TrEMBL | B9IBK2 | 1e-124 | B9IBK2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s01010.1 | 1e-125 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67580.2 | 3e-64 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0235s0100.13.p |
Publications ? help Back to Top | |||
---|---|---|---|
|