PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0233s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 263aa    MW: 29708.4 Da    PI: 4.8717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0233s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0233s0280.1.p 14 KGPWTAEEDMILINYIKLHGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding50.35.5e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  SapurV1A.0233s0280.1.p  67 RGNFSREEEDTILKLHEMLGNR-WSAIAAELP-GRTDNEIKNVWHTHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.878961IPR017930Myb domain
SuperFamilySSF466897.86E-3110108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002495.5E-161461IPR001005SANT/Myb domain
CDDcd001671.19E-111661No hitNo description
PROSITE profilePS5129424.88662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565115IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002495.0E-1567112IPR001005SANT/Myb domain
CDDcd001672.72E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTAE EDMILINYIK LHGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SREEEDTILK LHEMLGNRWS AIAAELPGRT DNEIKNVWHT HLKKRAEKNH  120
VTPEIKGLKT DQELVDSSNL AAGSDQAEER RPISPQQCSS DTSSVTTGDI DSSNNMCMKM  180
ELSDDFPEMD ENFWSDVLFA DNSSIAGDYS GIATEPQLQF QFSPLVIEVE QVGATNSNMY  240
DSTEYWHNLF TRAGESLELP EI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0233s0280.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306849.21e-174transcription factor MYB14
SwissprotQ9SJX85e-81MYB14_ARATH; Transcription factor MYB14
TrEMBLB9H8L91e-172B9H8L9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24550.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-83myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]