PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 263aa    MW: 29935.9 Da    PI: 7.1291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16956148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll ++v+++G g+W  I+ + g++R++k+c+ rw++yl
  SapurV1A.0230s0260.1.p  9 KGAWTEEEDTLLRNCVEKYGEGRWCQIPLKAGLNRCRKSCRMRWLNYL 56
                            79********************************************97 PP
2Myb_DNA-binding35.42.5e-1162111147
                             TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                             rg ++  E +l+ +++k+lG++     W++Ia +++ gRt++++k++w++ 
  SapurV1A.0230s0260.1.p  62 RGQFSIGEVDLIMRLHKLLGNRqvieMWSLIAGRLP-GRTANDVKNYWNTN 111
                             56677778899*************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.544460IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-22659IPR009057Homeodomain-like
SuperFamilySSF466891.22E-266108IPR009057Homeodomain-like
SMARTSM007171.3E-15858IPR001005SANT/Myb domain
PfamPF002493.7E-15956IPR001005SANT/Myb domain
CDDcd001671.96E-111156No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1960116IPR009057Homeodomain-like
PROSITE profilePS5129414.99761116IPR017930Myb domain
SMARTSM007171.2E-561114IPR001005SANT/Myb domain
PfamPF002494.4E-1062112IPR001005SANT/Myb domain
CDDcd001678.55E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASSFGVRKG AWTEEEDTLL RNCVEKYGEG RWCQIPLKAG LNRCRKSCRM RWLNYLKPNI  60
KRGQFSIGEV DLIMRLHKLL GNRQVIEMWS LIAGRLPGRT ANDVKNYWNT NLSKKVVSST  120
RDAQTKPEEK SITKHNIIKP RPRNFKNLCW LRAGKEDDLC KPYSTTAFPT TDISEIESVW  180
WESLLDDKEI NQTNNNSCLG SCSAANQEPI KSILVEDNPR GGIMTGDVLS ENGQNCWDDF  240
AFDADLWNLI DTEIDQQGLE GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-21911627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444002.11e-147transcription factor MYB90
SwissprotQ9FNV91e-59MY113_ARATH; Transcription factor MYB113
TrEMBLU5GFP31e-146U5GFP3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]