PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0240.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 265aa    MW: 29889.7 Da    PI: 8.4677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0240.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-18956148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll ++v+++G g+W+ I+++ g++R++k+c+ rw++yl
  SapurV1A.0230s0240.2.p  9 KGAWTEEEDILLRKCVEKYGEGSWHQIPSKAGLNRCRKSCRMRWLNYL 56
                            79********************************************97 PP
2Myb_DNA-binding41.92.3e-1362107148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg ++ +E + + +++k+lG++ W++Ia ++  gRt++++k++w+k l
  SapurV1A.0230s0240.2.p  62 RGQFSVDEVDMITRLHKLLGNR-WSLIAGRLS-GRTANDVKNYWNKNL 107
                             899*******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.899460IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-23659IPR009057Homeodomain-like
SuperFamilySSF466893.67E-296103IPR009057Homeodomain-like
SMARTSM007174.0E-16858IPR001005SANT/Myb domain
PfamPF002495.2E-17956IPR001005SANT/Myb domain
CDDcd001675.83E-121156No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2160111IPR009057Homeodomain-like
PROSITE profilePS5129417.56161111IPR017930Myb domain
SMARTSM007171.0E-1261109IPR001005SANT/Myb domain
PfamPF002491.6E-1162107IPR001005SANT/Myb domain
CDDcd001671.61E-865107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVGSLGVRKG AWTEEEDILL RKCVEKYGEG SWHQIPSKAG LNRCRKSCRM RWLNYLKPSI  60
KRGQFSVDEV DMITRLHKLL GNRWSLIAGR LSGRTANDVK NYWNKNLRKK VFSSTDEAQS  120
KPEAKSTAKD NIIKPQPRKL RNLWCLTGES TALFNVSSQH GNDLGKPCYT PASPPADYYE  180
VESLLWESLL DDREMNLTMN SSFLGSASAA NLESNESLFA ESNAPGGMKI GDTFFEQEQN  240
CWSTDICFDA HLESNQYRTR STTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2291114105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0240.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444724.11e-138transcription factor MYB113 isoform X2
SwissprotQ9FNV97e-58MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K1X7361e-136A0A2K1X736_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14480.11e-125(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-60myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]