PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0225s0240.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 78125 Da PI: 7.9801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.5 | 1.6e-21 | 63 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt +++ SapurV1A.0225s0240.4.p 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFDN 149 6**************9998877356667999***************999*********************998887889******** PP FAR1 84 eHnHela 90 +HnHel SapurV1A.0225s0240.4.p 150 HHNHELL 156 *****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-18 | 63 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.8E-19 | 279 | 370 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.582 | 554 | 590 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.4E-7 | 556 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.7E-6 | 565 | 592 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MMSEEAGQML VVYDDPSDQR SLSLDDTSST EESPDETRLS LETPNDVIPY IGQRFATHDE 60 GYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS 120 SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK 240 EKDPNFKFEY TLDSDNRLEN IAWSYASSIQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM 300 NNYGMPCFFG CVISREENSR SLSWALKAFL GFMNGKAPQT ILTDQNLCLK DAIAKEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVNIFGLLTN 420 RQVANLHALR NLWALPYLRS HFFAGMTAAG LSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMDD 540 GFHVRHHTKH VGGRKVYWDP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP 600 MRWRRINTSS AKLLHRSNDH GERIQLLQNM VSSLITESAK SKERLDIATE QVSILLSRIR 660 DQPVPPQVIR DFTSIYRKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0225s0240.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028383.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_011028384.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | B9N0G8 | 0.0 | B9N0G8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23620.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0225s0240.4.p |
Publications ? help Back to Top | |||
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