PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0224s0160.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 677aa MW: 73380.6 Da PI: 6.9372 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.5e-09 | 374 | 411 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + SapurV1A.0224s0160.5.p 374 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 411 554459******************************88 PP | |||||||
2 | BELL | 126.1 | 1.3e-40 | 238 | 309 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi SapurV1A.0224s0160.5.p 238 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 309 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.2E-67 | 162 | 307 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-51 | 167 | 306 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 352 | 415 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.46E-12 | 355 | 416 | No hit | No description |
SMART | SM00389 | 2.3E-9 | 355 | 419 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 356 | 422 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 358 | 421 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 372 | 411 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNIPPP PPSNNLVFLN AAASNSLSAT 60 PHLSCHAPSN TQQFVGIPLD PNSHDSSTLH GLMPRIHYNL YNPIDPPPTA RDTPRAQQGL 120 SLSLSSQQQG CFGSQVQSVS GEDIRVSGGS VSSGSGVTNG VLGMQGVLLS SKYLKAAQEL 180 LDEVVSVNNN DIKSELSKKS NGISSNTSNK VAGGSLAGEG SGGGEASGKR GPELSTAERQ 240 EIQMKKAKLI SMLDEVEQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTALA LKTISKQFRC 300 LKDAITGQIK ASNKSLGEED CLGEKIEGSR LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG 360 LPERSVSVLR AWLFEHFLHP YPKDSDKLML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM 420 YTEEIKEQEQ DGSEDKTSKS DHNEDSASRS ALQEKGSAGE NQTRSFKSLD NSPDAPSAIS 480 LPAASTSPVG GNVRNQSGFS FIGSSELEGI TQRSPKKPRS NDFIQSSSSV PSINMDIKPG 540 HEANNEQVSL KFGSERQSRD GYSFMGGQTN FIGGFGQYPI GEIGRFDGEQ FTPRFSGNGV 600 SLSLGLPHCE NLSLSGTHQT FLPNHDIQLG RRVEIGEPNE FGSINTSAPH SSTAYENIDI 660 QNGKRFIAQL LPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 361 | 418 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 361 | 418 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0224s0160.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028867 | 0.0 | CT028867.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443237.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443238.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443239.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443240.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443241.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443242.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024443243.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | B9IIL1 | 0.0 | B9IIL1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07040.3 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-167 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0224s0160.5.p |
Publications ? help Back to Top | |||
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