PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0216s0420.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 794aa MW: 91291.8 Da PI: 6.4525 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 103.3 | 2.2e-32 | 86 | 177 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+++++eHn SapurV1A.0216s0420.1.p 86 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSSFVKEHN 172 9***************************************998888545677889******************************** PP FAR1 87 Helap 91 Hel+p SapurV1A.0216s0420.1.p 173 HELVP 177 ***86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-30 | 86 | 177 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.1E-33 | 298 | 390 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.2E-11 | 566 | 612 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.905 | 578 | 614 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.9E-9 | 589 | 616 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MENEVLEFDI GLGSGADDED DDDADAVDID IDDDLPSTHP LHLTTSQNSA PISTSAPRIY 60 LPEGDLSDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNLNEK RTKDREIKRP RVITRVGCKA SLSVKMQDSG KWVVSSFVKE HNHELVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QRSMEGDIQL LLDYLRQMHS ENPDFFYALQ EDDGQFTGNV LWADPRARAN YSYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC AFILNETEAS FVWLFQTWLT AMSGHHPLSI 360 TTDHDAVIRL AIMQVFPETR HRFCKWHIFK KCQEKLSHVL LKHPTFEAEF HKCVNLTELI 420 EEFESCWLSL VDRYELRDHE WLQTIYSDRR QWVPVYLRDA FFAEMSITQR SDSMNSYFDG 480 YVNASTNLNH FFKLYEKAIE SRNEKEVKAD YDTMNTNPVL RTPSPMEKQA SGLYTRKLFV 540 RFQEELVGTL TFMASKAEDD GESITYQVSK FGEDHKAYHV KFNVLEMKAT CSCQMFEFSG 600 LLCRHVLTVF RVTNVLTLPS RYILKRWTRN AKSNVILEER PTDIYTGYLE SHTVRYNTLR 660 HEAFKFVEEG SKSLDTYNVA MGVLQEATSR VALAKKNEGR ASNVDGRNNG DSARSGIRAN 720 YTSGDHLGIS DQPLSEEDMD KKIQELRDEL EYTNRKCEVY RANLLSVLKD IEDHKLQLSI 780 KVQSLKISMK DSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0216s0420.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384877.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1X9IW98 | 0.0 | A0A1X9IW98_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0004s21880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0216s0420.1.p |
Publications ? help Back to Top | |||
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