PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0216s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 701aa    MW: 77244.3 Da    PI: 8.1721
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0216s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23112213199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++
  SapurV1A.0216s0160.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSI 196
                             89****************************996555555..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+++r+
  SapurV1A.0216s0160.1.p 197 VFL--RAENGDLCVGIRRA 213
                             ***..4488999****997 PP
2Auxin_resp116.22.9e-38275357283
              Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a  a+++++F+vvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dpvrWpnS+Wr+L+
  SapurV1A.0216s0160.1.p 275 AGLAANGNPFQVVYYPRASTPEFCVKASSVRAAMRTNWCSGMRFKMAFETEDSSRISWfMGTVASVQVTDPVRWPNSPWRLLQ 357
                             66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-38102216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-29108215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-21111212No hitNo description
PROSITE profilePS5086313.056112214IPR003340B3 DNA binding domain
SMARTSM010191.5E-22112214IPR003340B3 DNA binding domain
PfamPF023625.5E-22112213IPR003340B3 DNA binding domain
PfamPF065073.9E-33274357IPR010525Auxin response factor
PROSITE profilePS5174516.024586664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKKTDNKSLD PQLWEACAGS MVQIPPLNTK VFYFPQGHAE HSQSPVVFPQ GIPSLVLCRV  60
ASVKFLADPG TDEVFAKISL VPLPDTDLDF SQHVGVCADG NDSNNAEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGIG SGPESSSSHT GWNSNNATCA  240
NPYGGFSFFV KEEEMRNGGM KGSGRVNSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK  300
ASSVRAAMRT NWCSGMRFKM AFETEDSSRI SWFMGTVASV QVTDPVRWPN SPWRLLQVTW  360
DEPDLLQNVK CVSPWLVELV SNMPVIHMSP FSPPRKKFRF PQQFPLDSQF QLPSFSGNTL  420
GPSSPLCCLS DNTPAGIQGA RHAQFGISLS DFQFKNKLQS GLYLSSLQRF NPPSKNSENY  480
LTENTDSKKN LSCLLTMGSS SPNLEKSDNA KKHQFLLFGQ PILVEQQISH SCSTDAFPQV  540
VNDSNREKIS DFLRSAPGKI SQEKSCTAGF SWHQSLQNAS EIGMGTGHCK VFLESEDLGR  600
TLDLSELYSY EELQRKLGNM FGIDRSEMLS HVLYQDVTGT AKQIGDEPFS VFMKTAKRLT  660
ILRNRASSNS VGRRSWITGM RNAENGLEPP NKTGPLSIFA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-75437846388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0216s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384909.10.0auxin response factor 10
RefseqXP_024455732.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9MZ570.0B9MZ57_POPTR; Auxin response factor
STRINGPOPTR_0004s22130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]