PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0216s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 308aa    MW: 34544 Da    PI: 8.8166
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0216s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-20231265135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +l
  SapurV1A.0216s0150.1.p 231 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGRL 265
                             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-17225279IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084225261IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-15228289No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14229262IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.59E-15230281No hitNo description
PfamPF003201.3E-17231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSKSWFFDKD FSGVPDNFFE YALGCVDFPM EDVEPNDDDG EDWESKFRHL EPPPSNLLTT  60
FSTALCAEDA SSLEPNNSSC SVLLDGSSQL KQCPSSAEAS SSRSKPILSR SSDSKYSHRF  120
QATSPVSVLE SVGSSCSTGN ATAYYPKFVA PVRRPRSKQP RPRRRTFPFI PIACASKKFY  180
RLASPDPEFE YYNDEEILDS ARKRQKKRNT MLLSSAVEMA PKMKPVETRR CTHCQVTKTP  240
QWREGPLGPK TLCNACGVRY RSGRLLPEYR PAVSPTFVPF MHSNSHRKVL EMRKQAEQVT  300
PVKALDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201207RKRQKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0216s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2240747e-81CU224074.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040891.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A2K2AY201e-180A0A2K2AY20_POPTR; GATA family protein
STRINGPOPTR_0004s22140.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-48GATA transcription factor 11