PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 304aa MW: 33385.2 Da PI: 4.3759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0208s0290.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	277	300	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H SapurV1A.0208s0290.1.p 277 FSCSSCNRSFGSENALQSHSKAkH 300 89*****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.655	277	303	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0055	277	300	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	279	300	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005618	Cellular Component	cell wall
GO:0005730	Cellular Component	nucleolus
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0005829	Cellular Component	cytosol
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEFWGVEVKS GEPLRVESGD GFILHLSQAC LGEAKKDKGN ESVCIYVNFD DQKLVLGTLS 60 HDKIPQIPFD LVFEKDFELS HNLKNGSVYF SGYKVAQPDT SDSDEFNSDG EEDLPFPVEN 120 EAKQPKPEEE NPAKPDSKQK VKIVEPSKDG KPKPENDDSS DEEDDSSDDG ESSDDQPMMM 180 ANDEDENSED EDDKSDEDDD DSDDGDVKTP KKAEVGKKRS TESASKSPVP DKKAKFVTPQ 240 KTDFKKVGVH IATPHPSKQA AKTSANRQKM EQAQKSFSCS SCNRSFGSEN ALQSHSKAKH 300 SAA*

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0208s0290.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By fertilization. {ECO:0000269\|PubMed:15082924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145859	0.0	EF145859.1 Populus trichocarpa clone WS0113_M22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381322.1	1e-166	histone deacetylase HDT1
Refseq	XP_011018878.1	1e-166	PREDICTED: histone deacetylase HDT1
Swissprot	Q6V9I6	7e-80	HDT1_SOLCH; Histone deacetylase HDT1
TrEMBL	A9PC74	1e-166	A9PC74_POPTR; Uncharacterized protein
STRING	POPTR_0006s11770.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	3e-32	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0208s0290.1.p

Publications ? help Back to Top
Lagacé M,Chantha SC,Major G,Matton DP Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol., 2003. 53(6): p. 759-69 [PMID:15082924]