PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0208s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 849aa    MW: 92211.4 Da    PI: 6.33
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0208s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.55.9e-1284668232374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ ++s  ++++ ++a+++f+ +s
  SapurV1A.0208s0090.1.p 466 LTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPSMPQS--HTQKMASAFQVFNGIS 550
                             579************************************************************999998..5899999********* PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             P++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e+le+tg+rL++fA++lg+p
  SapurV1A.0208s0090.1.p 551 PFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----STEALEATGKRLSDFANKLGLP 633
                             *************************************************************....9********************* PP

                    GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             fef + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++h ++sFl rf+ea++
  SapurV1A.0208s0090.1.p 634 FEFIP-VAEKVGNLNPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----MLYLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAVH 712
                             *****.7*************************9..999999999999....**********************.899********** PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                             yysalfdsl a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy
  SapurV1A.0208s0090.1.p 713 YYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVK-FHNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGY 798
                             ******************************************888877.************************************** PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                             ++ e++g+l lgWkd  L+++SaWr
  SapurV1A.0208s0090.1.p 799 TLAEDNGTLKLGWKDLCLLTASAWR 823
                             ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.62439803IPR005202Transcription factor GRAS
PfamPF035142.0E-125466823IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MASASYLLCR HSSDNISINN TTENNSGGSC GNFDSTSTAS LPSASLLANG GNQAATMPMV  60
EAATGRMVRK RMASEMMEVQ STMSPQNQRL SRGNTNVYSL SISDNNDEDV IGMTRGIGAS  120
SFTSCSNSNI NPNNLNPILY PLLNYSTMTS MLPSSTNLTA ITSAGSAPVS VSGFLSSTPS  180
TTLITSCNDN QSQLPAVCGF SGLPLFPPER ERNIIRSNAV PPPALITTSS AYTPTPPSSM  240
EDATSATAWI DGIIKDLLHS STNVSIPQLI QNVREIIYPC NPNLASLLEY RLRSLTDPII  300
PANIYSVERR RNREAAAVPL PPQRNYNQGH APPGLTLDLD NVSNSAPPPV SSQVVSHYSN  360
WGPTPPLICQ PDIQQQHQQP QVHLVHDQHQ QESPSSTSNV TPTTLALNQG HPPQQAQDQQ  420
QEKSSSAETQ QVTSSTPPPP SSVAASRDMK EEMRQQKRNE EGLHLLTLLL QCAEAVSADN  480
FEEANKMLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGIYATLPS MPQSHTQKMA  540
SAFQVFNGIS PFVKFSHFTA NQAIQEAFER EDRVHIIDLD IMQGLQWPGL FHILASRPGG  600
PPYVRLTGLG TSTEALEATG KRLSDFANKL GLPFEFIPVA EKVGNLNPER LNVSKREAVA  660
VHWLQHSLYD VTGSDTNMLY LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA VHYYSALFDS  720
LGASYGEESE ERHVVEQQLL SREIRNVLAV GGPSRSGDVK FHNWREKLQQ SGFKGISLAG  780
NAATQATLLL GMFPSDGYTL AEDNGTLKLG WKDLCLLTAS AWRPFHVSIE TAPTTNHHHH  840
HHHRFVTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.04508243379Protein SCARECROW
5b3h_D0.04508243379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0208s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018909.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A385JI690.0A0A385JI69_POPTO; Shoot gravitropism 1
TrEMBLB9MTQ90.0B9MTQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein