PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0202s0430.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 481aa    MW: 52918.9 Da    PI: 6.6421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0202s0430.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-185397147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            r +WT eE++++++a k++G g W++I +++g ++t+ q++s+ qky
  SapurV1A.0202s0430.3.p 53 REKWTDEEHQRFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKY 97
                            789*******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-1747101IPR009057Homeodomain-like
PROSITE profilePS5129422.16548102IPR017930Myb domain
TIGRFAMsTIGR015571.3E-1651100IPR006447Myb domain, plants
SMARTSM007177.4E-1452100IPR001005SANT/Myb domain
PfamPF002495.7E-165397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-105399IPR009057Homeodomain-like
CDDcd001671.01E-115598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEVTNLKSFG KACDFDTNGC EQSETDIQLK EMYSFGSDNV PKVRKPYTIT KQREKWTDEE  60
HQRFLEALKL YGRGWRKIQE HVGTKTAVQI RSHAQKYFSK VVRESDGSNE SSLKPIEIPP  120
PRPKRKPAHP YPRKPVDVLE GTGASGQLER SPSPNSSVSE KENQSPISVL SALASDTLGS  180
ALSEPPNACS SPTSCTTDMH SISLSPSAKE TEHGTSNSSG EEKGNLSLVQ MFSTPRENFL  240
SEVKKSELGS KNAVCAEHDA AKEASSTSIK LFGITVKIAD SQKESPPGAE LVLSVISNEN  300
HDNVDADREK PSHILQRKQS DAELSLGMVN SNQNPCPSPA SVIQCTELQG GNANYFATNS  360
SIPWRAFCQG VPFLHLTSYD HTSPHKPTPC VEERFEEKEI LNERSCSGSN SSSVGDLENK  420
ERNLDVVDSQ CRQPSVEGRS SIQKSVRGFV PYKRCLGERE MISTVIVSEE RERQRARICS  480
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0202s0430.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484100.0EF148410.1 Populus trichocarpa x Populus deltoides clone WS01314_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317724.10.0protein REVEILLE 7
TrEMBLB9I4X50.0B9I4X5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-46MYB_related family protein