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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0202s0430.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 481aa MW: 52918.9 Da PI: 6.6421 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 53 | 97 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a k++G g W++I +++g ++t+ q++s+ qky SapurV1A.0202s0430.2.p 53 REKWTDEEHQRFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKY 97 789*******************.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-17 | 47 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.165 | 48 | 102 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-16 | 51 | 100 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.4E-14 | 52 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-16 | 53 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 53 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-11 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MEVTNLKSFG KACDFDTNGC EQSETDIQLK EMYSFGSDNV PKVRKPYTIT KQREKWTDEE 60 HQRFLEALKL YGRGWRKIQE HVGTKTAVQI RSHAQKYFSK VVRESDGSNE SSLKPIEIPP 120 PRPKRKPAHP YPRKPVDVLE GTGASGQLER SPSPNSSVSE KENQSPISVL SALASDTLGS 180 ALSEPPNACS SPTSCTTDMH SISLSPSAKE TEHGTSNSSG EEKGNLSLVQ MFSTPRENFL 240 SEVKKSELGS KNAVCAEHDA AKEASSTSIK LFGITVKIAD SQKESPPGAE LVLSVISNEN 300 HDNVDADREK PSHILQRKQS DAELSLGMVN SNQNPCPSPA SVIQCTELQG GNANYFATNS 360 SIPWRAFCQG VPFLHLTSYD HTSPHKPTPC VEERFEEKEI LNERSCSGSN SSSVGDLENK 420 ERNLDVVDSQ CRQPSVEGRS SIQKSVRGFV PYKRCLGERE MISTVIVSEE RERQRARICS 480 * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0202s0430.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148410 | 0.0 | EF148410.1 Populus trichocarpa x Populus deltoides clone WS01314_I10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317724.1 | 0.0 | protein REVEILLE 7 | ||||
TrEMBL | B9I4X5 | 0.0 | B9I4X5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03530.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 2e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0202s0430.2.p |