PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0201s0160.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 541aa    MW: 59888.3 Da    PI: 6.9624
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0201s0160.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  SapurV1A.0201s0160.2.p  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                            99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-10545No hitNo description
CDDcd002021.22E-15654No hitNo description
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139199.4E-11277369IPR028020ASX homology domain
PfamPF165503.7E-9298363IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAGPDDYEDH  60
RVSRLKSISI NKNKEVKLLK RKPNYDHRVD GGVALDYNQG YRNVVDEDTS NRSSSGSAIS  120
NSESCAQFGG ADASDLTGPS QSVVWDSLVP SRKRTCVTKP SPVEKLTKDL YTILHEQQSS  180
CFSGSSEEDL LFDNETPMVS VEIGHGSVLI RHPSSIARDE ESEASSLSVE NKQYLTNEAY  240
SHLVMLPVHN ENKSVNMTYP ITVKTKNLSR QGMQQEQLDR DKSPHIHILG SCNSPLCSVD  300
LNDILNFEEF ARHMTNEEQQ QLLKYLPPLD TAKRPHSIKS MFESPQFKEN INSYQQLLSE  360
GVFDLSFLEA KTEDCKSLER LTLSNLSKSK WVERYHLLKK CKNSIGMSLG GKGPNPNVVA  420
SSNLIGAKRS RDNLSQKFSE AKSMKSPKRI VMKATYEIKE LIDNDGSCFS PRSLFALPPD  480
GSSLMLESLH FVDESSDQDL LLDIPSNGSF AQAELLHPPN SFGQQASTSS SSIYPHLGCP  540
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0201s0160.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368951.10.0GATA transcription factor 26
SwissprotQ8W4H11e-154GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2K2BXZ30.0A0A2K2BXZ3_POPTR; Uncharacterized protein
TrEMBLU5GPN90.0U5GPN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-156GATA transcription factor 26