PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0198s0420.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 392aa    MW: 44853.8 Da    PI: 6.3799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0198s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-49371622128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             +pGfrF+Pt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg 
  SapurV1A.0198s0420.1.p  37 MPGFRFRPTEEELIEFYLRRKVEGKHFNV-ELITFLDLYSYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGA 122
                             79***************************.89***************8778899********************************* PP

                     NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             d+ + +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  SapurV1A.0198s0420.1.p 123 DRMIRAENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 162
                             **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-5436182IPR003441NAC domain
PROSITE profilePS5100553.94936183IPR003441NAC domain
PfamPF023651.6E-2438162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAIAAAMSHN DDQNNNNSND NTSNKDDEDD HEHDMVMPGF RFRPTEEELI EFYLRRKVEG  60
KHFNVELITF LDLYSYDPWE LPALAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT  120
GADRMIRAEN SRSIGLKKTL VFYSGKAPKG IRTSWIMNEY RLPQHETERY RKAEISLCCV  180
YKRAGIEDHP SLPRSLPSRA SSSRGAQSDK KHQSHVTVKS FQPLLGQSSQ QIEMEKTSET  240
DANGGSDVTT ALGLSQHNIN AYHPISPSLE LPASVEEAMF LNQTKQASSS FLVPNCTNLF  300
TVTSSISSNP ADDDLHRLIS YQQADIGQQQ QQQQQQQFYL LQQHQTSQLS SMAPQSQPLP  360
FNMLPTTFPD RLWEWNQIQE SNFRDYNNPF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-533818319165NO APICAL MERISTEM PROTEIN
1ut4_B3e-533818319165NO APICAL MERISTEM PROTEIN
1ut7_A3e-533818319165NO APICAL MERISTEM PROTEIN
1ut7_B3e-533818319165NO APICAL MERISTEM PROTEIN
4dul_A3e-533818319165NAC domain-containing protein 19
4dul_B3e-533818319165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0198s0420.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028443.10.0PREDICTED: NAC domain-containing protein 72
RefseqXP_011028444.10.0PREDICTED: NAC domain-containing protein 72
SwissprotQ9ZVP81e-112NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2K2AZ320.0A0A2K2AZ32_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-103NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]