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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0198s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 21036.7 Da PI: 8.6681 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 91 | 145 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F++++ ++ +++ LA++l+L+ rqV vWFqNrRa+ k SapurV1A.0198s0140.1.p 91 RKKLRLTKDQSSYLEETFQRHPALNPAKKHALAEQLNLKPRQVEVWFQNRRARTK 145 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 7.9e-39 | 91 | 179 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rl+k+q++ LEe+F+++ L+p +K++la++L+l+prqv+vWFqnrRARtk+kq+E dye+Lkr++++l++en+rL++ev+eL SapurV1A.0198s0140.1.p 91 RKKLRLTKDQSSYLEETFQRHPALNPAKKHALAEQLNLKPRQVEVWFQNRRARTKLKQTEADYEVLKRCCESLSNENRRLKREVQEL 177 69************************************************************************************* PP HD-ZIP_I/II 88 re 89 r+ SapurV1A.0198s0140.1.p 178 RS 179 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-19 | 82 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-16 | 89 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-16 | 91 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.17E-15 | 91 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 96 | 145 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.9E-11 | 147 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.6E-9 | 147 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEEDGYCNTK LGLGLGGETY VPWPPQKQKE KPVVRLDLSF TLCPDQQDSM KIDCHGKAEG 60 TRFRSEEDEE CGNKKRSDRS IDNSCMYDAG RKKLRLTKDQ SSYLEETFQR HPALNPAKKH 120 ALAEQLNLKP RQVEVWFQNR RARTKLKQTE ADYEVLKRCC ESLSNENRRL KREVQELRSQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0198s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308994.1 | 1e-109 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | Q01I23 | 4e-41 | HOX17_ORYSI; Homeobox-leucine zipper protein HOX17 | ||||
Swissprot | Q0JB92 | 4e-41 | HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | B9HAM6 | 1e-108 | B9HAM6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07100.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-42 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0198s0140.1.p |
Publications ? help Back to Top | |||
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