PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0196s0200.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 492aa    MW: 53508.3 Da    PI: 7.9861
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0196s0200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.1e-1659145191
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             ++Y +YA++vGF + +++s+   ++g+ t   + Cs+ gk++   k+   + + +++++t+Ckak+++ ++ +g++++ +++l+HnH
  SapurV1A.0196s0200.2.p  59 DYYYSYAHRVGFGIMRRSSRCD-DDGRLTYIVLSCSQCGKDRGIPKS---RFEWKQTSKTNCKAKINLVLNPQGQFHICNVVLDHNH 141
                             59**************998887.8999**************999888...77889999***************************** PP

                    FAR1  88 elap 91 
                             el+p
  SapurV1A.0196s0200.2.p 142 ELTP 145
                             *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1459145IPR004330FAR1 DNA binding domain
HamapMF_0017028.176245470IPR020672Ribose-5-phosphate isomerase, type A, subgroup
SuperFamilySSF1009502.9E-33245391No hitNo description
Gene3DG3DSA:3.40.50.13601.1E-42247386No hitNo description
CDDcd013981.34E-78248462IPR004788Ribose 5-phosphate isomerase, type A
TIGRFAMsTIGR000216.3E-56249466IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060261.9E-46295466IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754454.45E-19375452No hitNo description
Gene3DG3DSA:3.30.70.2606.9E-23387450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MESNSLVDVP LKKDIKASSG DDNEKVDEHG VSGVLLNGDG EVETPKIGMV FASQEEVRDY  60
YYSYAHRVGF GIMRRSSRCD DDGRLTYIVL SCSQCGKDRG IPKSRFEWKQ TSKTNCKAKI  120
NLVLNPQGQF HICNVVLDHN HELTPGKLHP NICKKSKSFR TRKGREGKEQ AGMMLHPDFQ  180
SIFGEPLGSE AASPDSVKQQ PSFSNHLLNG DRHLLCSYTG LPTGEMISNR LKRRSLALEG  240
SQNSQDSLRQ ALAKRAVALV KSGMVIGVGT GRTLTLVIDE IGKLIQEGKL KDIAAVGTNY  300
QSRIIARQYG MTTVDLNDVN DVDIAFDVVD EVDINKNLLK CRGASHTVQK VVDSMAKVCI  360
LLVEHTKVVH RLGSNIPVAV EVLPIAVSPV LRRLIALGGV PEIRSASRKD GSVITDLGNM  420
IVDVSFPSGI QNPADLEKNI NMIPGVVDNG IFSAVATLVL VAVRDGGNIK VMNLEEFLEG  480
VIGHRDASSS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk5_B4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk5_C4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk5_D4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk7_A4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk7_B4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk7_C4e-482464664223D-Ribose-5-Phosphate Isomerase
1lk7_D4e-482464664223D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0196s0200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027247.10.0PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic
TrEMBLA0A2K1ZWF00.0A0A2K1ZWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.11e-146(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.22e-10FAR1 family protein