PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0196s0190.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 393aa    MW: 42955.1 Da    PI: 9.2817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0196s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1877166291
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +Y++YA ++GF+  k++ +ks ++g+++  t+ Cs++gk+ ++ ++ ++ + r+r   rt+Ckakl+v+   dg+ +v ++ leHnH
  SapurV1A.0196s0190.2.p  77 YYDKYACHLGFNSIKKS-TKSGDDGNVKYFTLACSRSGKELPSASQtSKFNFRKRLPPRTNCKAKLNVTIGPDGRVYVCRVILEHNH 162
                             9**********987775.66779999**************99998833446679999****************************** PP

                    FAR1  88 elap 91 
                             el+p
  SapurV1A.0196s0190.2.p 163 ELVP 166
                             **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1677166IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.13601.6E-38255391No hitNo description
SuperFamilySSF1009501.29E-32257391No hitNo description
CDDcd013981.31E-44261391IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060266.1E-21310391IPR004788Ribose 5-phosphate isomerase, type A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEDDSKMNVI IDTKMNVTVE KDMEGRNDKM VVDSDEVNEV IIINIDENES EGVGNDDEIK  60
PPSIGMVFNT PDEVRSYYDK YACHLGFNSI KKSTKSGDDG NVKYFTLACS RSGKELPSAS  120
QTSKFNFRKR LPPRTNCKAK LNVTIGPDGR VYVCRVILEH NHELVPGLHG MKKKKSRAPR  180
AKKVGTGQSH VPHSVAHEAG SSANLKSDYA IPRIVTDPNQ IIFGSSHLLT KRSVNRNVSS  240
GSKRRYSVFA NPVLNQESTE RILARKAVEF VKSGMVIGLG SGTTISMVME ELGRLIREGK  300
LKDIIAVGGN YQSRVLARQF GVTIVDLSGV SKIDIAFDGV DEVDFNKNLL KCGGPAHTVQ  360
KVIDSVASEC IILVDQPKVV HRLGSAFPVP VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk5_B3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk5_C3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk5_D3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk7_A3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk7_B3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk7_C3e-272543921139D-Ribose-5-Phosphate Isomerase
1lk7_D3e-272543921139D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0196s0190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2779587e-63GU277958.1 Populus balsamifera isolate FRE01 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779597e-63GU277959.1 Populus balsamifera isolate FRE01 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779607e-63GU277960.1 Populus balsamifera isolate GAL12 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779617e-63GU277961.1 Populus balsamifera isolate GAL12 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779627e-63GU277962.1 Populus balsamifera isolate GIL14 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779637e-63GU277963.1 Populus balsamifera isolate GIL14 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779647e-63GU277964.1 Populus balsamifera isolate HAY07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779657e-63GU277965.1 Populus balsamifera isolate HAY07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779667e-63GU277966.1 Populus balsamifera isolate INU03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779677e-63GU277967.1 Populus balsamifera isolate INU03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779687e-63GU277968.1 Populus balsamifera isolate MGR10 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779697e-63GU277969.1 Populus balsamifera isolate MGR10 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779707e-63GU277970.1 Populus balsamifera isolate NWL07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779717e-63GU277971.1 Populus balsamifera isolate NWL07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779727e-63GU277972.1 Populus balsamifera isolate RNA13 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779737e-63GU277973.1 Populus balsamifera isolate RNA13 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779747e-63GU277974.1 Populus balsamifera isolate STO11 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779757e-63GU277975.1 Populus balsamifera isolate STO11 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779767e-63GU277976.1 Populus balsamifera isolate WHR03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779777e-63GU277977.1 Populus balsamifera isolate WHR03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307978.20.0probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1
TrEMBLB9H9330.0B9H933_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-10FAR1 family protein