PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0194s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 642aa    MW: 70928.1 Da    PI: 10.1284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0194s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101566246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                            + W t+E++ll+ avk++G ++W+++a +++       +  t+++c+ ++++
  SapurV1A.0194s0170.1.p 15 QTWGTWEELLLASAVKRHGFKNWDSVALEIQtktslplLLTTPENCQQKYHD 66
                            68*****************************888888877788888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377968IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-41067IPR009057Homeodomain-like
SuperFamilySSF466891.37E-51170IPR009057Homeodomain-like
SMARTSM007178.9E-61370IPR001005SANT/Myb domain
PfamPF002491.3E-91566IPR001005SANT/Myb domain
CDDcd001678.18E-61667No hitNo description
SMARTSM002973.5E-11276385IPR001487Bromodomain
SuperFamilySSF473702.35E-15287389IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.1E-13291385IPR001487Bromodomain
PROSITE profilePS5001411.795295366IPR001487Bromodomain
PfamPF004391.7E-9296369IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MAREEEGEHE NQNQQTWGTW EELLLASAVK RHGFKNWDSV ALEIQTKTSL PLLLTTPENC  60
QQKYHDLNRR FNTNNKLHHT RKPLDYQEQH NNVNTADNSN TTNKFVSIPW LEELRQLRVA  120
ELKQEVQRYD VSILTLQLKV KKLEEERERS VQGGDSNTEK PDLKEERSET EKEHESGKPV  180
SVSGEESDRE NRSVNESNST GSGGKGGVED AAGEMEKLEP ARSGSGEPDP VTSGSNRKAA  240
AEGGGGGGEE YESLSSGRKR KGRERKEFSE TGGDETVAAC SVKSEPLVGF IEMIGAHKNG  300
SLFESLIESQ EMDVYKDMIR QHMDLEAIQT KLEQGSYSSS NLFFFRDLLL LFNNALVFFP  360
KHSVQSLAAH ELRSLVSNEM RKETHNSDSS VMPENIPPQP KSELERSDSL LAKHKSSIPI  420
IVCRKRSSIS VKPSSSSLGQ KIEQQQQQSN ENKSVNDLKP PTVEQGLLKK KSDEKPVTGA  480
RSTRRGKKSL AKGSSSPSKK QNTSPDSKAA VPDKPETPKT EKKKGEALAL EKKKSAVDFL  540
KRMKKNSPAE TPKKNSRAAS NGGGERKKEG SGGKGESGKD RVLRKSSEKK PGKQESSPAK  600
RNVGRPSKKA AAEVSGGVSG KRGRDIGEKE AAKRPRKRSR R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259266RKGRERKE
2632640KRPRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0194s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481911e-135EF148191.1 Populus trichocarpa clone WS0128_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042005.10.0PREDICTED: uncharacterized protein LOC105137816 isoform X1
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-86DNA-binding bromodomain-containing protein