PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0188s0290.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 433aa    MW: 46756 Da    PI: 8.2097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0188s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-053223601255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  SapurV1A.0188s0290.1.p 322 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 360
                             7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.166310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-5320364No hitNo description
SuperFamilySSF474597.98E-11320372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-9324367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MESANLHHQH QLQDQYFAGS SSLTTNTTPS SYAESGSARA WTQTTTLNSG NSGPNSNGVI  60
FNQRQKNESP IPSLNSAMFQ DLGLQYWNNN AGNFSSQSAY DLQLSKIKEE LSSSDSFPKF  120
TEMLNSPSST IEDPLLSSSS YIKDEQTNLS LSEKLLLKTI SSGFPINGHD QFSTRQIPSS  180
HHNCSSFGSA VPSRGSFSQI YPSINISNFN QPSSPLIPGS LDMNLQALDL LTSTRFSGSF  240
PHPASLDPLD MFKDSLSFGF DSMQHSNQRP ACSPNKISSA NEKIAEAKRP NNSLMEPKVT  300
QAAAPKKSKL ESRAPCPPLK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  360
NQVETLSVPY MKSSRNNTSR SIQAASNSGG EESKRDLRSR GLCLVPLSCM SYVTTDGGGG  420
GIWPPPNFGG GT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0188s0290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383714.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A3N7F5W20.0A0A3N7F5W2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-76bHLH family protein