PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0300.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 454aa    MW: 50464.2 Da    PI: 5.1616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2806.9e-86474452373
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lLl+cA a++++d +laq++++ l++ as  gdp+qRl++ f++AL +r ++ +++ ++    s+ +++n+  +   l +++++ 
  SapurV1A.0187s0300.1.p  47 EKLLLHCASAFEHNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALISRASKVCPTAMNFDGGSTIRRRNMPVTE--LAVYVDLI 131
                             689***************************************************99999988777777766654443..3469**** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeel 172
                             P+++f++ + N+aIl+a+eg ++vHi+Df+i++++QWp+L++aLa+R+eg+pslRiT+ +   ++    + + ee+g rL++fA+  
  SapurV1A.0187s0300.1.p 132 PWHRFGFCASNSAILKAIEGYSKVHILDFSITHCMQWPTLIDALAKRAEGAPSLRITVPSCRPPVppfLNVSSEEVGLRLSNFAKFR 218
                             *********************************************************977755556689999*************** PP

                    GRAS 173 gvpfefnvl.......................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvk 232
                             ++pfefnv+                        ++ l+ l++++L+++ +Eal++n++  l +l de+  ++      rd++L +vk
  SapurV1A.0187s0300.1.p 219 DLPFEFNVIdhgpssftssdqimskesshdlyFESLLNHLTPSMLDLRDDEALVINCQNWLRYLSDEQRGSNVqdssLRDAFLCTVK 305
                             *********************9988888777656677888************************98764333223449********* PP

                    GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                             + +P +vvvv++++d++++s+  r++ +++y +  fd+le+ l ++s++r  +E   +g +i+n+++ eg +r+er e+  k ++r+
  SapurV1A.0187s0300.1.p 306 GFNPCIVVVVDEDSDLSAPSLSSRITACFNYLWIPFDALETFLLKDSSQRFEYESD-IGHKIENIISFEGVQRIERLESGIKLSQRM 391
                             ********************************************************.****************************** PP

                    GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             ++aGF++v++ e+++ ++++ll++++ ++g+++ee+ + lvl+Wk+++ v+ +aW
  SapurV1A.0187s0300.1.p 392 RNAGFSSVSFCEDTVGEVRSLLEEHAsGWGMKIEED-HMLVLTWKGHNSVFSTAW 445
                             **************************9999999875.789*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.48920426IPR005202Transcription factor GRAS
PfamPF035142.4E-8347445IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MKTELRGNSN TSISLQNPSS TLFSNPQSSL SGALNGCLGS LDGACIEKLL LHCASAFEHN  60
DGTLAQQVMW VLNNVASLVG DPNQRLTSWF LRALISRASK VCPTAMNFDG GSTIRRRNMP  120
VTELAVYVDL IPWHRFGFCA SNSAILKAIE GYSKVHILDF SITHCMQWPT LIDALAKRAE  180
GAPSLRITVP SCRPPVPPFL NVSSEEVGLR LSNFAKFRDL PFEFNVIDHG PSSFTSSDQI  240
MSKESSHDLY FESLLNHLTP SMLDLRDDEA LVINCQNWLR YLSDEQRGSN VQDSSLRDAF  300
LCTVKGFNPC IVVVVDEDSD LSAPSLSSRI TACFNYLWIP FDALETFLLK DSSQRFEYES  360
DIGHKIENII SFEGVQRIER LESGIKLSQR MRNAGFSSVS FCEDTVGEVR SLLEEHASGW  420
GMKIEEDHML VLTWKGHNSV FSTAWVPNAS MQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-561744865475Protein SHORT-ROOT
5b3h_B3e-5674481421Protein SHORT-ROOT
5b3h_E3e-5674481421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003240.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2K1ZT440.0A0A2K1ZT44_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-123GRAS family protein