PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 328aa    MW: 34579.5 Da    PI: 6.1405
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.2e-16241277135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C+ ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  SapurV1A.0187s0150.1.p 241 CTHCRISSksTPMMRRGPTGPRTLCNACGLKWANKGV 277
                             ****998889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.02395130IPR010399Tify domain
SMARTSM009797.9E-1095130IPR010399Tify domain
PfamPF062001.1E-1198129IPR010399Tify domain
PROSITE profilePS5101713.245168210IPR010402CCT domain
PfamPF062033.5E-16168210IPR010402CCT domain
SMARTSM004012.7E-12235289IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11239289No hitNo description
Gene3DG3DSA:3.30.50.104.7E-14240282IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.091241292IPR000679Zinc finger, GATA-type
CDDcd002024.86E-14241290No hitNo description
PROSITE patternPS003440241268IPR000679Zinc finger, GATA-type
PfamPF003203.0E-13241277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPNSNGQAGT ATPPPQFYNK KPVAVPVQMN HIEAQLVDEE DGDNNNIAGV GEESIDNTNG  60
IQFEDGGCGV IGEAVDASDM YVGTNGGGGT DYGLVTANND QLTLSFQGEV YVFDAVAPDK  120
VQAVLLLLGG YEIPSGIPAM GTAPINQRGP NHGICDLSGT GRSIQPHRAA SLSRFREKRK  180
ERCFDKKIRY TVRKEVALRM QRKKGQFTSS KANSDDGGSV SSGCSGMQGS GQDESMLETL  240
CTHCRISSKS TPMMRRGPTG PRTLCNACGL KWANKGVLRN LSKVPNMSIQ QSSMKQVNGE  300
ANNSDAITAA ADIVSPNGDN STAATET*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166017e-35AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023069.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL76e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2I4DVR11e-124A0A2I4DVR1_JUGRE; GATA transcription factor 24-like
STRINGPOPTR_0007s03130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]