PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0180s0510.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 499aa    MW: 55166.1 Da    PI: 4.4315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0180s0510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0180s0510.1.p 14 KGRWTAEEDEKLTEYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding55.11.7e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ ++eE+e++v++++ lG++ W++Ia++++ gRt++++k++w+++l
  SapurV1A.0180s0510.1.p  67 RGNISAEEEEIIVNLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                             7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.516961IPR017930Myb domain
SuperFamilySSF466891.65E-2711108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002493.9E-141461IPR001005SANT/Myb domain
CDDcd001675.29E-91661No hitNo description
PROSITE profilePS5129424.98162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007177.2E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
CDDcd001671.73E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEKLTEYIR ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LAADLKRGNI SAEEEEIIVN LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRRIYSFR  120
RPVNESLPLI METAKEGMLA KRKGGGAARF AAERKTISHP QKDATRVLAK RPRMNINTGD  180
FSDSNIEGVQ LPQTPAVERE TLSSAINDTV IRDPCVEDRE LMGLVMASPC PETGRVKSGI  240
GGEKANPVIF PSDGRIRPNS FMNPSGGEKE NDSFGLFCEG VGNEMLSFND VMDKELLDPD  300
GDSTLNDEGQ NSGDRQSRIL SPHKTVDVFD SIGNLSSNGE SGDWSSFSSI SSSGFDDCGV  360
DWSWDDVKGG HVEIGDETRG GNMLSWLWEE ESQRLEDAVD CEKENDMLLG FFLDLPHSNG  420
ESGDWSSFSS ISSSGFDDCG VDWSWDDVKG GHVEIGDETR GGNMLSWLWE EESQRLEDAV  480
DCEKENAMLL GFFLDLPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0180s0510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440665.10.0protein ODORANT1
TrEMBLB9I9L10.0B9I9L1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2814433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-69myb domain protein 111