PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0178s0150.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 566aa MW: 61683.3 Da PI: 7.2778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0178s0150.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.6e-17	261	310	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eY++ Lq SapurV1A.0178s0150.2.p 261 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 310 889***********************7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-25	256	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-19	257	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.844	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-15	261	314	No hit	No description
Pfam	PF00010	2.1E-14	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-13	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MELPQQSPFG TEGRKPPHDF LSLDSHSSTV QQDPTPPSQG GFLQTHDFLQ PLERVSKATA 60 IEVEILTIEK PPPPAPPPSV EHILPGGIGT YSISHVSYFN QRVPKPENAL FSVAQASSTD 120 KNDENSNCSS YSASGFTLWE ESALKMGKTG KENVGERSNI IREAAVKSGQ WTTSERPSHS 180 SSNNHRNSFS SLSSSHRPPG LKSTQSFIEM IQSAKGSTLD DDLDDEETFL LKKETPSPIH 240 KGELRVKIDG KSNDQKPNTP RSKHSATEQR RRSKINDRFQ TLRELIPHGD QKRDKASFLL 300 EVIEYVQFLQ EKVQKYEGSY QGWNHELAKL GPWRNNTRPV ESSIDQSRGV NSGVSPALLL 360 AAKLDEKNIT ISSSINPGGA RNPDESDTSS ASTFNAMDHQ PGITNKAMPF PISLQPNLFN 420 TGRIAGAAAQ FLPRLAFDAE NTETEPQPHP QPWHAISCTS DGAVASDKLK QQNLTVEGGT 480 ISISSAYSQG LLNTLTQALQ SSGVDLSQAS VSVQIELGKK GNSRQTAPTS IDNNVPPSNQ 540 GTMRSRFSSG EESNQALKKL KTSKR*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MELPQQSPFG TEGRKPPHDF LSLDSHSSTV QQDPTPPSQG GFLQTHDFLQ PLERVSKATA  60
IEVEILTIEK PPPPAPPPSV EHILPGGIGT YSISHVSYFN QRVPKPENAL FSVAQASSTD  120
KNDENSNCSS YSASGFTLWE ESALKMGKTG KENVGERSNI IREAAVKSGQ WTTSERPSHS  180
SSNNHRNSFS SLSSSHRPPG LKSTQSFIEM IQSAKGSTLD DDLDDEETFL LKKETPSPIH  240
KGELRVKIDG KSNDQKPNTP RSKHSATEQR RRSKINDRFQ TLRELIPHGD QKRDKASFLL  300
EVIEYVQFLQ EKVQKYEGSY QGWNHELAKL GPWRNNTRPV ESSIDQSRGV NSGVSPALLL  360
AAKLDEKNIT ISSSINPGGA RNPDESDTSS ASTFNAMDHQ PGITNKAMPF PISLQPNLFN  420
TGRIAGAAAQ FLPRLAFDAE NTETEPQPHP QPWHAISCTS DGAVASDKLK QQNLTVEGGT  480
ISISSAYSQG LLNTLTQALQ SSGVDLSQAS VSVQIELGKK GNSRQTAPTS IDNNVPPSNQ  540
GTMRSRFSSG EESNQALKKL KTSKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0178s0150.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322046.3	0.0	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-123	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1XI22	0.0	A0A2K1XI22_POPTR; Uncharacterized protein
STRING	POPTR_0015s03550.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-120	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0178s0150.2.p

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]