PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0178s0150.17.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 357aa    MW: 38960.3 Da    PI: 8.9407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0178s0150.17.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-1752101255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h++ E+rRR++iN++f++Lrel+P+     ++K +Ka+ L +++eY++ Lq
  SapurV1A.0178s0150.17.p  52 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 101
                              889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.3E-2647124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1948121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.84450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-1552105No hitNo description
PfamPF000101.1E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1356106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIQSAKGSTL DDDLDDEETF LLKKETPSPI HKGELRVKID GKSNDQKPNT PRSKHSATEQ  60
RRRSKINDRF QTLRELIPHG DQKRDKASFL LEVIEYVQFL QEKVQKYEGS YQGWNHELAK  120
LGPWRNNTRP VESSIDQSRG VNSGVSPALL LAAKLDEKNI TISSSINPGG ARNPDESDTS  180
SASTFNAMDH QPGITNKAMP FPISLQPNLF NTGRIAGAAA QFLPRLAFDA ENTETEPQPH  240
PQPWHAISCT SDGAVASDKL KQQNLTVEGG TISISSAYSQ GLLNTLTQAL QSSGVDLSQA  300
SVSVQIELGK KGNSRQTAPT SIDNNVPPSN QGTMRSRFSS GEESNQALKK LKTSKR*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0178s0150.17.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322046.30.0transcription factor BIM1 isoform X1
RefseqXP_024442672.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ34e-67BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2K1XI220.0A0A2K1XI22_POPTR; Uncharacterized protein
TrEMBLA0A2K1XI270.0A0A2K1XI27_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-72bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]