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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0175s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24229.7 Da PI: 5.188 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74 | 1.2e-23 | 25 | 71 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kr+e +snr+vtfskR+ng++KKA ELS+LC+ae aviifs++ kl+ SapurV1A.0175s0190.1.p 25 KRVEKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIIFSEQRKLF 71 799****************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-30 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.721 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.09E-34 | 18 | 86 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-27 | 18 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-22 | 26 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDAANQQQQQ ETRRTSKGRQ KIEIKRVEKE SNRYVTFSKR KNGLFKKATE LSTLCGAETA 60 VIIFSEQRKL FSCGQPDVDQ VLDRYLAETE RVPNNFPSLI KNNVENQLAN KQEYAESLKR 120 LEEEQTVAKM IGSMNNMNGG GFWWDLPIDN MEQDELEAYR ESMEQLKKNL IARLGLIEST 180 CNALTLIVIN VNDGFMCSLI LFTFVSNLLI F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-18 | 18 | 87 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-18 | 18 | 87 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-18 | 18 | 87 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-18 | 18 | 87 | 1 | 70 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0175s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004765.1 | 1e-112 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1XEI5 | 1e-111 | A0A2K1XEI5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s12640.1 | 1e-110 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-32 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0175s0190.1.p |