PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

SapurV1A.0173s0270.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 314aa MW: 34042.6 Da PI: 8.4108

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0173s0270.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl+++++yhrrhkvCe hsk+ +v+v+g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ SapurV1A.0173s0270.2.p 24 CLVDGCTSDLTKCRDYHRRHKVCELHSKSRQVFVRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-32	18	85	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.735	21	98	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-38	22	103	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.5E-29	24	97	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MESASSESSK RAKTLKNATR VPSCLVDGCT SDLTKCRDYH RRHKVCELHS KSRQVFVRGQ 60 EQRFCQQCSR FHSLGEFDEG KRSCRKRLDG HNRRRRKPQP EPLSLNSASI FSNQGTRYLH 120 FGSSQIFSTS AMNTVWTGAA KAESDDPMLH TSDQSSMNFG GRKNLFPGSL SFNYKEGKQF 180 PFLQGTCSTD PGDSVHLDGS STLGNSGNGQ KMFSDGLNRA IDSSRALSLL SSPPSGTREI 240 GLSDIMQPDL NSPAQSLIPS LNYNALGMES EPAGSVLVSD GSGGNANGQH MFQIGPDGSS 300 ADGSHQTLSF SWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	24	97	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	97	KRSCRKRLDGHNRRRRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0173s0270.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020783.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_011020784.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_011020785.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_011020786.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_011020787.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
TrEMBL	A0A385JHW4	0.0	A0A385JHW4_POPTO; Squamosa promoter-binding protein-like
TrEMBL	B9GZN1	0.0	B9GZN1_POPTR; Uncharacterized protein
STRING	POPTR_0003s16780.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-48	SBP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0173s0270.2.p