PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0173s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 602aa    MW: 68791.6 Da    PI: 9.6085
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0173s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-08395434345
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +WT+eE +l+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  SapurV1A.0173s0220.1.p 395 SWTPEEYDLIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 434
                             7*******************.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.78319390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5322402IPR009057Homeodomain-like
PROSITE profilePS500906.934388437IPR017877Myb-like domain
SuperFamilySSF466892.39E-8392447IPR009057Homeodomain-like
SMARTSM007170.4392439IPR001005SANT/Myb domain
PfamPF139213.6E-12396454No hitNo description
Gene3DG3DSA:1.10.10.602.9E-7403411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-8412454IPR009057Homeodomain-like
PROSITE profilePS500907.364438506IPR017877Myb-like domain
SMARTSM007171.2442508IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-7482505IPR009057Homeodomain-like
SuperFamilySSF466891.84E-5486569IPR009057Homeodomain-like
PROSITE profilePS500906.841508561IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MLASSRPVTI VTANGKEKKK KKRKLEHVNI EKESQVSKKK NKMSEVREAL GETHMRIDDN  60
LGLHKNVQVD FVSNSESDVR RDRKRNHKEK KREGKTITVS SVVNSIDDNR REEVFGVQKG  120
PGNEDITNMN NMEGQGRKKE KKRKQNKYDD GSGDTGIVKG VAGGNDAGRE ESTEVVQDKA  180
ESSKEEKKKK KKKRFNVVPE AASMQIMAET TGSQYSVIEG DGGSTSSKKK KARDGKLKVN  240
AEGGNKRKKK AKSLENHSKE KSSERVTEME EDAETTHSSE KSPSKVASKR VSFCEDVEIF  300
PSSDGPSGKK AVGEDGLVRG KRFSHEEDEK VKEAVLNYIN VHGLGADGLN MVLNCVKHPA  360
IKHCWKEIGA ALPWRPRESV YYRAHILFER DQNSSWTPEE YDLIRKFHEK HGSDWKTLAE  420
ALGKHRFHVK DTWRRIKLIN MKKGKWSQDE YQFLFDSVNL DLRLKAFEER KTKHGMLRDN  480
ISWTAISEKL ETRTDALCCQ KWYDQLTSPM VAEGKWLDTD DYRLLMELYD LDASCMEDVD  540
WDCLLEHRSG DLCRKRWNQM VKHLGDHRNK SFAEQVDVLI KRYCPDVLDA REAYNSKPAV  600
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624EKKKKKRKL
21823KKKKRK
31924KKKRKL
4137144KKEKKRKQ
5187193KKKKKKR
6228249KKKARDGKLKVNAEGGNKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0173s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303776.30.0RNA polymerase I termination factor
TrEMBLA0A2K2B8D00.0A0A2K2B8D0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-132MYB_related family protein