PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0173s0020.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 194aa    MW: 21756.1 Da    PI: 9.1297
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0173s0020.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.6e-52141381128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat +gyWkatg
  SapurV1A.0173s0020.3.p  14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGTGYWKATG 96 
                             79****************************.89***************54...46799***************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk++l++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  SapurV1A.0173s0020.3.p  97 IDKQILTSkGNQAVGMKKTLVFYRGKPPHGTRTDWIMHEYRL 138
                             *****99857778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-579148IPR003441NAC domain
PROSITE profilePS5100552.85114164IPR003441NAC domain
PfamPF023652.2E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEKLSFVKNG AVRLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPEVD VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGTG YWKATGIDKQ ILTSKGNQAV GMKKTLVFYR  120
GKPPHGTRTD WIMHEYRLAI TETAACNTPL NKNSIQVECL LGTFSFLPSK SLEILIEASK  180
LLSTEINLYV PAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-471213818145NAC domain-containing protein 19
3swm_B1e-471213818145NAC domain-containing protein 19
3swm_C1e-471213818145NAC domain-containing protein 19
3swm_D1e-471213818145NAC domain-containing protein 19
3swp_A1e-471213818145NAC domain-containing protein 19
3swp_B1e-471213818145NAC domain-containing protein 19
3swp_C1e-471213818145NAC domain-containing protein 19
3swp_D1e-471213818145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0173s0020.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482530.0EF148253.1 Populus trichocarpa x Populus deltoides clone WS01312_D03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304662.11e-110NAC domain-containing protein 83
SwissprotQ9FY933e-87NAC83_ARATH; NAC domain-containing protein 83
TrEMBLB9GZC31e-109B9GZC3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16490.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-89NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]