PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0170s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 450aa    MW: 48666.9 Da    PI: 8.3238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0170s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-115884127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            ++++ C+++ rtG C++G++C+F+H+p
  SapurV1A.0170s0110.1.p 58 PGEPDCSYYIRTGLCRFGPTCRFNHPP 84
                            5789*********************97 PP
2zf-CCCH38.81.6e-12105129327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             +++C+++++tGtCk+G++CkF+H++
  SapurV1A.0170s0110.1.p 105 QPECQYYLKTGTCKFGATCKFHHPR 129
                             799********************96 PP
3zf-CCCH382.8e-12151175327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             + +C +++rtG+CkyG++CkF+H++
  SapurV1A.0170s0110.1.p 151 EIECAYYLRTGQCKYGSTCKFHHPQ 175
                             568********************97 PP
4zf-CCCH37.83.1e-12310336127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C+f+++tG Ck+G+ C+F+H++
  SapurV1A.0170s0110.1.p 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336
                             5789*********************96 PP
5zf-CCCH39.87.5e-13356382127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++lC+f++r+G Ck+G++CkF H++
  SapurV1A.0170s0110.1.p 356 PGEPLCMFYSRYGSCKFGPSCKFDHPM 382
                             589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.845785IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55784IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-85984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-46383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159102130IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5108129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056148176IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6148175IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10151175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5154174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596309337IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6309336IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5315337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234355383IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7355382IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10357382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5358382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDFDAGIPMS RGGGGGGGGL PAVTEETSMS PSLSEDAMWQ MNLRSSEAME AGPYPERPGE  60
PDCSYYIRTG LCRFGPTCRF NHPPNRKLAI ATAKMMGEFP ERIGQPECQY YLKTGTCKFG  120
ATCKFHHPRD KAGISGRVSL NILGYPLRPG EIECAYYLRT GQCKYGSTCK FHHPQPANVM  180
VPLRGSPVYP TVNSPTTPGQ QSYPGGLPTN WSRASFITSP RWQAPSNYTP LILPQGVVSV  240
PGWNAYSGQL GSVSSPESQQ QTGNSQIYGT SRQSESVNAG SQGTFSPYRS GSVPLGFYAL  300
QRESVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PTPDCVLSPI GLPLRPGEPL  360
CMFYSRYGSC KFGPSCKFDH PMGIFTYNLT ASSSADAPVR RLLGSSSGSA ALTLSSEGLV  420
EAESTKPRRL SLSEPRQMPP GDDNIDIGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0170s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164701e-154AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325901.30.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1WQ170.0A0A2K1WQ17_POPTR; Uncharacterized protein
STRINGXP_002512627.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1