PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0168s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 792aa    MW: 88426.4 Da    PI: 8.6346
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0168s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.55.7e-21699779186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W+ +ev+ Li++r e+++r++  + +++lWee+s ++++ g++rsp qCk  w +l+++y++ k   k+     ++++pyf++++
  SapurV1A.0168s0020.2.p 699 KWKPEEVKSLIKLRGELHSRFQVVRGRMALWEEISTNLMADGINRSPGQCKYLWTSLAQKYEESKSDPKS-----QKSWPYFEDMD 779
                             7***************************************************************999998.....456*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM008498.0E-154192IPR001279Metallo-beta-lactamase
Gene3DG3DSA:3.60.15.101.6E-5319232IPR001279Metallo-beta-lactamase
SuperFamilySSF562814.85E-5739397IPR001279Metallo-beta-lactamase
PfamPF127067.2E-1139142IPR001279Metallo-beta-lactamase
PfamPF075211.1E-4336369IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.072692756IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-5693758IPR009057Homeodomain-like
PfamPF138379.9E-19697781No hitNo description
CDDcd122031.08E-19699763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MLLSDVMTLY CFCDDMFSYD ELGVQKIIPD TTFIRRWRHK IEAVIITHGH EDHIGALPWV  60
IPALDHHTPI YASSFTMELI KKRLKENGIF VPSRLKVFKT KRKFTAGPFE IEPIRVTHSI  120
PDCCGLVLRC ADGTILHTGD WKIDESPMDG KVFDRETLEE LSKEGVTLMM SDSTNILSPG  180
RTISESVVAD ALLRRISAAK GRIITTQFAS NIHRLGSVKA AADLTGRKMV FVGMSLRTYL  240
DAAWKDGKAP IDPSTLVKVE DIDAYAPKDL LIVTTGSQAE PRAALNLASY GSSHALKLNK  300
EDVILYSAKV IPGNESRVMK MMNRISEIGS TIVMGRNELL HTSGHGYRGK LEEVLRIVKP  360
QHFLPIHGEL LFLKEHELLG KSTGIRHTTV IKNGEMLGVS HLRKRKVLSN GFVSLGKENL  420
QLMYNDGDKA FGTSTELCVD ERLRIATDGI VVVSMEILRP QNADGLVENS LKGKIKITTR  480
CLWLDKGKLL DALHKAAHAA LSSCPVNCPL AHMERTVSEM LRKMVRKYSG KRPEVIAIAV  540
ENPVAVLSDE LNEKLSGHSH AGLGISALRK TADQHRKKNQ VDRKQHGGND YAHLEKTSAK  600
NSEVDGFKFE RELSKEEETS SSPSLAEGHS SNSKNQDNFR KSFVPPSSVH ELVKSDENLV  660
PPGEHVDKLK KDGTISSDDD LLENQNSRSK RSEPVKRTKW KPEEVKSLIK LRGELHSRFQ  720
VVRGRMALWE EISTNLMADG INRSPGQCKY LWTSLAQKYE ESKSDPKSQK SWPYFEDMDN  780
ILSDSETMAT E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bk1_A2e-72754232562Metal dependent hydrolase
3bk2_A2e-72754232562Metal dependent hydrolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0168s0020.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321691.20.0uncharacterized protein LOC7463114
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLB9IF880.0B9IF88_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10570.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]