PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0167s0140.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 286aa MW: 30733.2 Da PI: 5.0162 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.2 | 1.9e-15 | 146 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq SapurV1A.0167s0140.4.p 146 VHNLSEKRRRSRINEKMIALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 192 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-19 | 139 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-20 | 139 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.466 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-13 | 145 | 187 | No hit | No description |
Pfam | PF00010 | 6.4E-13 | 146 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-17 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MADLYGPARS PANEPEENSS FFQQFLRCNS YSSSSKLNHH ALSTPVETGS AAVELLDCPL 60 FGWSETECGA GAGKSGVNFS DPGGYYVKES VENAVSSGVS KRRGVSAQDD LGDFSCDSEK 120 GAEVAEMQAN TVRPRSSSKR SRAAEVHNLS EKRRRSRINE KMIALQNLIP NSNKTDKASM 180 LDEAIEYLKQ LQLQLQMLTM RNGLSLHPMC LPGAPQPMQL PLSGMSFDEG NGLLITNTLK 240 GIFSADEESS VQTALNLPSH CTDSNQPIAV PSGTNITSSE ANFGY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0167s0140.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017181.1 | 1e-166 | PREDICTED: transcription factor SPATULA-like isoform X1 | ||||
Swissprot | Q9FUA4 | 3e-41 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | B9GNU6 | 1e-165 | B9GNU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s12600.1 | 1e-144 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0167s0140.4.p |