PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0167s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 365aa    MW: 40283.5 Da    PI: 7.5941
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0167s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.5e-36251172103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkk
  SapurV1A.0167s0090.1.p  25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFSKIVPDR---------WEFANEYFKK 102
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g+k+ll++i+r+k++
  SapurV1A.0167s0090.1.p 103 GEKHLLCEIHRRKTA 117
                             ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.27E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALMLDNCEG VLLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFSKIVP DRWEFANEYF KKGEKHLLCE IHRRKTAQTQ  120
VAINQHHPHS PFGVNGPTFF PFPSRSSISP SDSDEQANNW CDSPSLASPP RGGVATVTVI  180
GGGGGFNSSV SAISEDNERL RRSNDMLMSE LVHMKKLYND IIYFVQNHVK PVAPSNSCSS  240
SLLLCGPSPY ATANHVISNG SLPQKPLNQL LGYYPITAPA NPKQVPQVHV LNSPTTTSQS  300
SMTILEEASN NVCNTKLFGV PLQTKKRLRP EQAGSNPGNM ETSKARLVLD KDDLGLNLMP  360
LSRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-212011625131Heat shock factor protein 1
5d5v_B7e-212011625131Heat shock factor protein 1
5d5v_D7e-212011625131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0167s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478790.0EF147879.1 Populus trichocarpa clone WS0125_K14 unknown mRNA.
GenBankKP0140090.0KP014009.1 UNVERIFIED: Populus simonii heat shock transcription factor B4b-like (HsfB4b) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301176.20.0heat stress transcription factor B-4
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9GNU90.0B9GNU9_POPTR; HSF family protein
STRINGPOPTR_0002s12640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4