PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0166s0150.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 362aa    MW: 39871.8 Da    PI: 7.0171
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0166s0150.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15220279155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.0166s0150.2.p 220 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 279
                             57*******************666664478446*************************98 PP
2AP227.57.7e-09322356138
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                             s y+GV++++++grW A+I  +     +k  +lg+fg 
  SapurV1A.0166s0150.2.p 322 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 356
                             57****************988532...5********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18220289IPR016177DNA-binding domain
PfamPF008474.1E-12220279IPR001471AP2/ERF domain
CDDcd000181.53E-22220289No hitNo description
SMARTSM003801.3E-28221293IPR001471AP2/ERF domain
PROSITE profilePS5103219.454221287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16221288IPR001471AP2/ERF domain
PRINTSPR003676.0E-6222233IPR001471AP2/ERF domain
PRINTSPR003676.0E-6269289IPR001471AP2/ERF domain
PfamPF008473.5E-4322355IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-5322355IPR016177DNA-binding domain
PROSITE profilePS510328.847323361IPR001471AP2/ERF domain
SMARTSM003800.06323361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-4323355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQLMSYES SSTASPHYLF DNFYADGWAN PKESQVTTTT  60
MAESSNILTS FIGAETQHQQ VPKLEDFFGD SSSSINVRYS DSQTETQDSS LTHIYHDHQG  120
SAAAYFNDQQ DLKAIAGFQA FSTNSGSEVD DSASIAPSRL GGIESTGNEL GFSNKAALSL  180
GVSNDTINNQ GGSTEKLAIV SADDDCSNKK ISDTFGQRTS IYRGVTRHRW TGRYEAHLWD  240
NSCRREGQAR KGRQVYLGGY DKEEKAARAY DLAALKYWGP AATTNFPVSN YSTELEGMKY  300
VSKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFGKCLFF  360
S*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0166s0150.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460943.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_024460944.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-150AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3N7F9030.0A0A3N7F903_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-147AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]