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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0166s0150.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
AP2 |
| Protein Properties |
Length: 510aa MW: 55915.3 Da PI: 6.5677 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0166s0150.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 47.5 | 4.3e-15 | 220 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g
SapurV1A.0166s0150.1.p 220 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 279
57*******************666664478446*************************98 PP
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| 2 | AP2 | 50.2 | 6.5e-16 | 322 | 373 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
SapurV1A.0166s0150.1.p 322 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 373
57****************988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010080 | Biological Process | regulation of floral meristem growth |
| GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
| GO:0035265 | Biological Process | organ growth |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MAPATNWLSF SLSPMEMLRS SESQLMSYES SSTASPHYLF DNFYADGWAN PKESQVTTTT 60
MAESSNILTS FIGAETQHQQ VPKLEDFFGD SSSSINVRYS DSQTETQDSS LTHIYHDHQG 120
SAAAYFNDQQ DLKAIAGFQA FSTNSGSEVD DSASIAPSRL GGIESTGNEL GFSNKAALSL 180
GVSNDTINNQ GGSTEKLAIV SADDDCSNKK ISDTFGQRTS IYRGVTRHRW TGRYEAHLWD 240
NSCRREGQAR KGRQVYLGGY DKEEKAARAY DLAALKYWGP AATTNFPVSN YSTELEGMKY 300
VSKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFATEEEA 360
AEAYDIAAIK FRGLNAVTNF EMNRYDVETI MKSALPVGGA AKRLKTSLNA EQKPNVNDNQ 420
QQPPHLRCSS YSTTNNISFA AIQPGSTAVP CGVPFDASTA LYHHNLLHHL QTTNNFAATD 480
SSGSSSSMAT AMTNSPQTTE YFTWPHQTY*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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