PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0166s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 229aa    MW: 25150 Da    PI: 10.2396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0166s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1361107354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+++E +RR+riNs f++Lr++lP++      K++Ka++Le++++++k+L
  SapurV1A.0166s0040.1.p  61 KKHSMAECKRRSRINSQFATLRTILPNL-----IKVNKASVLEETIRCVKEL 107
                             68*************************9.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.04958107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1061107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-961112No hitNo description
Gene3DG3DSA:4.10.280.107.0E-1362117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1262125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.16E-5146216No hitNo description
CDDcd048732.09E-5149208No hitNo description
Gene3DG3DSA:3.30.70.2601.9E-6149216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MASQQMNDVQ PLSSYNNSAA ICSNQDDFRQ ALINSINETT YNNSEARQLL SEEGSKLIAA  60
KKHSMAECKR RSRINSQFAT LRTILPNLIK VNKASVLEET IRCVKELTNT VSGLKETYGG  120
GRLECVFPAG ADKLRIGSCE GKGQEVVKVV FSCDDKRKLL SDVARAVRSV KGKVVRAEMV  180
TMGGRTKCVL WVQGINGNDE LKMLRRVLNA LTEKPNLART SSKPKLTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0166s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461149.11e-148transcription factor bHLH131
SwissprotP0CB251e-42BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A2K1ZM961e-147A0A2K1ZM96_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14360.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-43bHLH family protein