PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0165s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 181aa MW: 20234.4 Da PI: 8.9607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0165s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7e-10	14	65	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ +L +llP+ + k+++ ls + Le+A YIk+L+ SapurV1A.0165s0140.1.p 14 KTVERNRRIHMKGLCLKLASLLPHpHVcKPSKDMLSQQDQLELAACYIKQLR 65 579*******************5555555555**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.521	8	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-9	13	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-9	14	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-5	16	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MQKSNGESSS LDRKTVERNR RIHMKGLCLK LASLLPHPHV CKPSKDMLSQ QDQLELAACY 60 IKQLRERVER LQRAKEEQAT TAPRTSSSAM TSLMIGLSLP VVELRDFGSS IEVVLISGLN 120 KNFMFYEVIN VLGEEGAEVV SASYSTVGDK VFHTIHAQVR FSRVGVETSR VWTRLQELIC 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0165s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318646.1	1e-107	transcription factor bHLH162
TrEMBL	B9I387	1e-106	B9I387_POPTR; Uncharacterized protein
STRING	POPTR_0012s08050.1	1e-107	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0165s0140.1.p