PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0164s0320.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 250aa MW: 27936.3 Da PI: 7.9437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF +r++ ++ s+r+g+i++rt+vC++eg+r++++k +r++ra+tr+gC+a++ +k+++g w++ +l +eH+ SapurV1A.0164s0320.1.p 76 EFYCSYATRTGFVTRMRDHNCSQRDGSIISRTLVCNREGFRKSTDKPrMPWSRKPRAVTRVGCRARVSFRKQSNGAWVIRSLIKEHT 162 6******************************************99984556899********************************* PP FAR1 87 Hela 90 H+la SapurV1A.0164s0320.1.p 163 HPLA 166 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-25 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDLVQGPDVP DEDVDNSSDG NPQHGSDGTI GGSSIEATSQ PEQSDKMTPN STGGFELTVV 60 EPYVGQEFES EAAALEFYCS YATRTGFVTR MRDHNCSQRD GSIISRTLVC NREGFRKSTD 120 KPRMPWSRKP RAVTRVGCRA RVSFRKQSNG AWVIRSLIKE HTHPLALPES HSPKARGNPK 180 IYQVPADDRR VHELMRELMV EKKRNASLRE FIHLLFNHIE EHTQGLSEKI QCVVEKVKKI 240 ESDGKNSGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0164s0320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311261.2 | 1e-176 | protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | B9HHY3 | 1e-174 | B9HHY3_POPTR; FAR1 family protein | ||||
STRING | POPTR_0008s07650.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-47 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0164s0320.1.p |