PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0163s0040.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 153aa MW: 16970.5 Da PI: 10.2275 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.5 | 4e-12 | 15 | 43 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++e LA +l+L rqV vWFqNrRa+ k SapurV1A.0163s0040.4.p 15 RQKEALALQLKLRPRQVEVWFQNRRARSK 43 6899***********************98 PP | |||||||
2 | HD-ZIP_I/II | 85.6 | 6.7e-28 | 14 | 77 | 26 | 90 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr + SapurV1A.0163s0040.4.p 14 QRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 77 689***********************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.15E-7 | 14 | 46 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 14 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-10 | 15 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.807 | 15 | 45 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-9 | 15 | 43 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 20 | 43 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.4E-22 | 45 | 88 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.0E-10 | 45 | 79 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MINLWSSINL SYMQRQKEAL ALQLKLRPRQ VEVWFQNRRA RSKLKQTEME CEYLKRWFGS 60 LTEQNRRLQR EVEELRALKV GPPTVISPHS CEPLPASTLT MCPSCERVTT TGSDKGSTKT 120 TTTAEATPAT AATLSSKVGA PALQSRQSSA AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 45 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0163s0040.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038655.1 | 5e-84 | PREDICTED: homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 3e-54 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-54 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2K1YSC3 | 7e-81 | A0A2K1YSC3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s12300.1 | 1e-81 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-45 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0163s0040.4.p |