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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
SapurV1A.0163s0040.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family |
HD-ZIP |
Protein Properties |
Length: 233aa MW: 25525.9 Da PI: 8.3785 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
SapurV1A.0163s0040.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.6 | 9.2e-18 | 69 | 123 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq + Lee F++ ++++ +++e LA +l+L rqV vWFqNrRa+ k
SapurV1A.0163s0040.1.p 69 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 123
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 115.8 | 2.6e-37 | 69 | 157 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL
SapurV1A.0163s0040.1.p 69 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 155
69************************************************************************************* PP
HD-ZIP_I/II 88 ree 90
r +
SapurV1A.0163s0040.1.p 156 R-A 157
9.4 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MAVSPSSISS LELTMSMPGF SSSPSFPSSE VCAVKDLDIN QLPSGAGEEE WITAGMDDEE 60 ESTNGGPPRK KLRLSKEQSR LLEESFRQRH TLNPRQKEAL ALQLKLRPRQ VEVWFQNRRA 120 RSKLKQTEME CEYLKRWFGS LTEQNRRLQR EVEELRALKV GPPTVISPHS CEPLPASTLT 180 MCPSCERVTT TGSDKGSTKT TTTAEATPAT AATLSSKVGA PALQSRQSSA AC*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 117 | 125 | RRARSKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |