![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0162s0390.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 755aa MW: 82677.6 Da PI: 6.3522 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ SapurV1A.0162s0390.2.p 24 RERWTEEEHSRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.52 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 755 aa Download sequence Send to blast |
MEIFSSGEDL VIKTRKPYTI TKQRERWTEE EHSRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAVVKG VSIGQALDIE IPPPRPKKKP SNPYPRKIGV GPPASQVGAK 120 DGKLLTSASF PRCKQVLGLE KEPLPEKING DERPTNAKDN QDDNSSEVFP LLQEPHYSSV 180 SSVNKNPVPT LEILKKTSPF REFVSSAKEG NHDASNQSFV TVELGANQKL DNSDVKQTVQ 240 DSNTSEFSKS ENFNSFSENL FQQKKSDDFI GALRTDGMQT MQNYPRHVPV HVLDGSLGTC 300 MQTPPSDFSF QDSMFHPIGE IPACPNLYPH SAASKTTDHP NLSPRPSTHQ SFPSFPPFTP 360 THHNQEDYKS FLHISSTFSS LIVSTLLQNP AAHAAASFSA TFWPYGNVES SVDSPACAQG 420 GFQSRQLNSA PSMAAIAAAT VAAATAWWAT NGLLPMCAPL HTDFPCPPAT AIQSVDTGEV 480 SATKTERKET TENPVQDPEH TEAVQAQNAS KSPKITSSDC EESGGSRLNT VPEVVDLELT 540 TTPHEVQDSS KTKSRKQIDR SSCGSNTPSS SEIETDALKK VEKGTEEPKE DDANHPASES 600 SSHRCRSSSS TSDSWKAVSE EGRLAFQALF TREVLPQSFS PPYMHQKEDT GEKKDADEKD 660 GDASLIDLNS KTWEHCSGHH QEGEKNALPR CENYGEEGLL TIGLGHGKLK ARRTGFKPYK 720 RCSLEAKESR MGTGGGQGEE KGPKRLRLEG EASV* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0162s0390.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148067 | 0.0 | EF148067.1 Populus trichocarpa clone WS0127_E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441064.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_024441065.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_024441066.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A9PI51 | 0.0 | A9PI51_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10260.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-118 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0162s0390.2.p |