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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0162s0340.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 43280.3 Da PI: 5.8352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.4e-12 | 196 | 247 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + K + a+i A++++k+L+ SapurV1A.0162s0340.2.p 196 QRMNHIAVERNRRRLMNDHLDSLRSLMPPS---YIHKGDQASIIGGAIDFVKELE 247 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.19E-13 | 194 | 251 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-16 | 195 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 195 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 196 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-10 | 196 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-10 | 201 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MESLQGPINS CFLEEHNLDL GCLDQVFIDT ESLRFGEEEP RISSPSFEDK MPFLQMLQTV 60 ETPPFFPCKE PSFQTLLKLQ HLQKPWNMST FYMPETDTQV QPLELESCVT HDTVDVHSPV 120 KSETNPNPHS KSCLVGASPE PAEPYSGSSI PWRTRPQTVP NITIPFSKSS TIIITRERRK 180 RKRTRPTKNK EEVENQRMNH IAVERNRRRL MNDHLDSLRS LMPPSYIHKG DQASIIGGAI 240 DFVKELEQFV QSLEAQKRMR EIDAASSTGI SPTEYSTSQQ QCDLLVEEGG TCEEERTVIN 300 KSEATEIEVA AVQNHVNLKV KSQRIPGQLL RAIVALEDLG LTVLHLNITS SQATVLYSFN 360 LKVPLLVFPK LFPSFLCFGQ LF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | RRKRKR |
2 | 196 | 207 | RMNHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0162s0340.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375391.2 | 0.0 | transcription factor bHLH67 isoform X1 | ||||
TrEMBL | A0A2K1XTL1 | 0.0 | A0A2K1XTL1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10190.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61950.1 | 1e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0162s0340.2.p |