PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 389aa    MW: 43756.5 Da    PI: 5.3275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12196247155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+ +N+ ++ Lr+l+P++   +  K + a+i   A++++k+L+
  SapurV1A.0162s0340.1.p 196 QRMNHIAVERNRRRLMNDHLDSLRSLMPPS---YIHKGDQASIIGGAIDFVKELE 247
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.23E-13194251No hitNo description
SuperFamilySSF474592.62E-16195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13196259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-10201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MESLQGPINS CFLEEHNLDL GCLDQVFIDT ESLRFGEEEP RISSPSFEDK MPFLQMLQTV  60
ETPPFFPCKE PSFQTLLKLQ HLQKPWNMST FYMPETDTQV QPLELESCVT HDTVDVHSPV  120
KSETNPNPHS KSCLVGASPE PAEPYSGSSI PWRTRPQTVP NITIPFSKSS TIIITRERRK  180
RKRTRPTKNK EEVENQRMNH IAVERNRRRL MNDHLDSLRS LMPPSYIHKG DQASIIGGAI  240
DFVKELEQFV QSLEAQKRMR EIDAASSTGI SPTEYSTSQQ QCDLLVEEGG TCEEERTVIN  300
KSEATEIEVA AVQNHVNLKV KSQRIPGQLL RAIVALEDLG LTVLHLNITS SQATVLYSFN  360
LKLEDDCKLG STDEVAAAVH QIFRSING*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RRKRKR
2196207RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0162s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375391.20.0transcription factor bHLH67 isoform X1
TrEMBLA0A2K1XTL10.0A0A2K1XTL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.12e-81bHLH family protein