PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 495aa    MW: 54631.2 Da    PI: 5.3575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12317362454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI+++
  SapurV1A.0162s0110.1.p 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEM 362
                             799***********************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-5325208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.863313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17315376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-13316366No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16317379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEELIISPSI SSSLVSLSHE TPPTLQQRLQ FIVQSQPDWW SYAIFWQTSK DDSGQTFLAW  60
GDGHFQGSKD TCPKPSTVHN SRMSTSNSER KSVMKGIQPL IDECHDLDTS LMDDTDATDS  120
EWFYVMSLTR SFSAGDGILG KAYTTGSLIW LTGVHELQFY SCERVKEAQM HGIETLICIP  180
TSCGVLELGS SNLIRENWGI VQQAKSLFGS DLTSCLVSKG PSNPCQEPIQ FLDGNISVAD  240
GGTVAGLQEE DHTTDHGEKK AQERAEAKKD SVNKPGQSYV DSEHSDSDIH LAAVNIEKRV  300
PKKRGRKPGL VRDAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN  360
EMKAKVDELE SQLQRESKKL KLEVSDNTDN QSTTTSVDQA ACRPSSNSGG AGLALEIEVK  420
FVGNDAMIRV QSETVNYPGS RLMSALRDLE LQVHHASMSS LNELMLQDVV VRVPDHGLRT  480
EEALKSALLG RLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-32242088192Transcription factor MYC3
4rqw_B5e-32242088192Transcription factor MYC3
4rs9_A5e-32242088192Transcription factor MYC3
4yz6_A5e-32242088192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0162s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440348.10.0transcription factor MYC2 isoform X1
TrEMBLA0A2I4KK780.0A0A2I4KK78_POPTR; BHLH family protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-71NACL-inducible gene 1