PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0161s0200.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 229aa MW: 25369.6 Da PI: 10.9942

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0161s0200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.6e-13	9	53	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qk+ SapurV1A.0161s0200.2.p 9 PWTEEEHRRFLFGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKH 53 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.821	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	3	59	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-16	6	56	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-8	6	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	8	53	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-10	9	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-8	9	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MWIVNTGVPW TEEEHRRFLF GLQKVGKGDW RGISRNFVKT RTPTQVASHA QKHFLRLNSV 60 NRRRRRTSLF DITADTVTSM PKEEQEAHRQ DSNGNNHASP SNPPLPPPLQ ANSITSFSGV 120 PAIPTRTVNP SVLPLEIENP IMENQSLGQG HQFINHSTNL VRPVPVVDPS PRTSAMPDLN 180 LNLKPTGDSS SLSLKLSLPF DQRESTSRSS AFQAMSSLKN GDKFIFVA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	RRRRRT

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0161s0200.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145942	2e-74	EF145942.1 Populus trichocarpa clone WS0114_H05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322138.1	1e-105	transcription factor MYB1R1
Swissprot	Q2V9B0	2e-40	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	B9IEJ9	1e-103	B9IEJ9_POPTR; MYB-like family protein
STRING	POPTR_0015s08020.1	1e-104	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0161s0200.2.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]