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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0161s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 29648.9 Da PI: 5.769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.2e-10 | 154 | 201 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq SapurV1A.0161s0140.2.p 154 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.24E-9 | 148 | 205 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 148 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.643 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-18 | 150 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-8 | 154 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDPPLINETS FSAANPSSYT LAEIWPFPPP PPPTRSGLRM DNLADPDGSL EESTLTDQSS 60 ANGTRIRKTR DFSSEKDDST KIVSTTTSAN DLNDSNGKRR KITGSRSVND DSRAETEASS 120 AANNKSAEQS SKASEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM NMLQDLVPGC 180 NKVIGKALVL DEIINYIQSL QCQVEFLSMK LEAVNSRMNT STTIEGLHPK DPFVATGMLF 240 SPQPTREYVQ GSQSEWLHMQ VGGSFERAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0161s0140.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321546.2 | 1e-175 | transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q9LV17 | 9e-86 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | B9IEI7 | 1e-173 | B9IEI7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07930.1 | 1e-174 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-80 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0161s0140.2.p |
Publications ? help Back to Top | |||
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